""" test where we are determining what we are grouping, or getting groups """ from datetime import ( date, timedelta, ) import numpy as np import pytest import pandas as pd from pandas import ( CategoricalIndex, DataFrame, Grouper, Index, MultiIndex, Series, Timestamp, date_range, period_range, ) import pandas._testing as tm from pandas.core.groupby.grouper import Grouping # selection # -------------------------------- class TestSelection: def test_select_bad_cols(self): df = DataFrame([[1, 2]], columns=["A", "B"]) g = df.groupby("A") with pytest.raises(KeyError, match="\"Columns not found: 'C'\""): g[["C"]] with pytest.raises(KeyError, match="^[^A]+$"): # A should not be referenced as a bad column... # will have to rethink regex if you change message! g[["A", "C"]] def test_groupby_duplicated_column_errormsg(self): # GH7511 df = DataFrame( columns=["A", "B", "A", "C"], data=[range(4), range(2, 6), range(0, 8, 2)] ) msg = "Grouper for 'A' not 1-dimensional" with pytest.raises(ValueError, match=msg): df.groupby("A") with pytest.raises(ValueError, match=msg): df.groupby(["A", "B"]) grouped = df.groupby("B") c = grouped.count() assert c.columns.nlevels == 1 assert c.columns.size == 3 def test_column_select_via_attr(self, df): result = df.groupby("A").C.sum() expected = df.groupby("A")["C"].sum() tm.assert_series_equal(result, expected) df["mean"] = 1.5 result = df.groupby("A").mean(numeric_only=True) expected = df.groupby("A")[["C", "D", "mean"]].agg("mean") tm.assert_frame_equal(result, expected) def test_getitem_list_of_columns(self): df = DataFrame( { "A": ["foo", "bar", "foo", "bar", "foo", "bar", "foo", "foo"], "B": ["one", "one", "two", "three", "two", "two", "one", "three"], "C": np.random.default_rng(2).standard_normal(8), "D": np.random.default_rng(2).standard_normal(8), "E": np.random.default_rng(2).standard_normal(8), } ) result = df.groupby("A")[["C", "D"]].mean() result2 = df.groupby("A")[df.columns[2:4]].mean() expected = df.loc[:, ["A", "C", "D"]].groupby("A").mean() tm.assert_frame_equal(result, expected) tm.assert_frame_equal(result2, expected) def test_getitem_numeric_column_names(self): # GH #13731 df = DataFrame( { 0: list("abcd") * 2, 2: np.random.default_rng(2).standard_normal(8), 4: np.random.default_rng(2).standard_normal(8), 6: np.random.default_rng(2).standard_normal(8), } ) result = df.groupby(0)[df.columns[1:3]].mean() result2 = df.groupby(0)[[2, 4]].mean() expected = df.loc[:, [0, 2, 4]].groupby(0).mean() tm.assert_frame_equal(result, expected) tm.assert_frame_equal(result2, expected) # per GH 23566 enforced deprecation raises a ValueError with pytest.raises(ValueError, match="Cannot subset columns with a tuple"): df.groupby(0)[2, 4].mean() def test_getitem_single_tuple_of_columns_raises(self, df): # per GH 23566 enforced deprecation raises a ValueError with pytest.raises(ValueError, match="Cannot subset columns with a tuple"): df.groupby("A")["C", "D"].mean() def test_getitem_single_column(self): df = DataFrame( { "A": ["foo", "bar", "foo", "bar", "foo", "bar", "foo", "foo"], "B": ["one", "one", "two", "three", "two", "two", "one", "three"], "C": np.random.default_rng(2).standard_normal(8), "D": np.random.default_rng(2).standard_normal(8), "E": np.random.default_rng(2).standard_normal(8), } ) result = df.groupby("A")["C"].mean() as_frame = df.loc[:, ["A", "C"]].groupby("A").mean() as_series = as_frame.iloc[:, 0] expected = as_series tm.assert_series_equal(result, expected) @pytest.mark.parametrize( "func", [lambda x: x.sum(), lambda x: x.agg(lambda y: y.sum())] ) def test_getitem_from_grouper(self, func): # GH 50383 df = DataFrame({"a": [1, 1, 2], "b": 3, "c": 4, "d": 5}) gb = df.groupby(["a", "b"])[["a", "c"]] idx = MultiIndex.from_tuples([(1, 3), (2, 3)], names=["a", "b"]) expected = DataFrame({"a": [2, 2], "c": [8, 4]}, index=idx) result = func(gb) tm.assert_frame_equal(result, expected) def test_indices_grouped_by_tuple_with_lambda(self): # GH 36158 df = DataFrame( { "Tuples": ( (x, y) for x in [0, 1] for y in np.random.default_rng(2).integers(3, 5, 5) ) } ) gb = df.groupby("Tuples") gb_lambda = df.groupby(lambda x: df.iloc[x, 0]) expected = gb.indices result = gb_lambda.indices tm.assert_dict_equal(result, expected) # grouping # -------------------------------- class TestGrouping: @pytest.mark.parametrize( "index", [ Index(list("abcde")), Index(np.arange(5)), Index(np.arange(5, dtype=float)), date_range("2020-01-01", periods=5), period_range("2020-01-01", periods=5), ], ) def test_grouper_index_types(self, index): # related GH5375 # groupby misbehaving when using a Floatlike index df = DataFrame(np.arange(10).reshape(5, 2), columns=list("AB"), index=index) df.groupby(list("abcde"), group_keys=False).apply(lambda x: x) df.index = df.index[::-1] df.groupby(list("abcde"), group_keys=False).apply(lambda x: x) def test_grouper_multilevel_freq(self): # GH 7885 # with level and freq specified in a Grouper d0 = date.today() - timedelta(days=14) dates = date_range(d0, date.today()) date_index = MultiIndex.from_product([dates, dates], names=["foo", "bar"]) df = DataFrame(np.random.default_rng(2).integers(0, 100, 225), index=date_index) # Check string level expected = ( df.reset_index() .groupby([Grouper(key="foo", freq="W"), Grouper(key="bar", freq="W")]) .sum() ) # reset index changes columns dtype to object expected.columns = Index([0], dtype="int64") result = df.groupby( [Grouper(level="foo", freq="W"), Grouper(level="bar", freq="W")] ).sum() tm.assert_frame_equal(result, expected) # Check integer level result = df.groupby( [Grouper(level=0, freq="W"), Grouper(level=1, freq="W")] ).sum() tm.assert_frame_equal(result, expected) def test_grouper_creation_bug(self): # GH 8795 df = DataFrame({"A": [0, 0, 1, 1, 2, 2], "B": [1, 2, 3, 4, 5, 6]}) g = df.groupby("A") expected = g.sum() g = df.groupby(Grouper(key="A")) result = g.sum() tm.assert_frame_equal(result, expected) msg = "Grouper axis keyword is deprecated and will be removed" with tm.assert_produces_warning(FutureWarning, match=msg): gpr = Grouper(key="A", axis=0) g = df.groupby(gpr) result = g.sum() tm.assert_frame_equal(result, expected) msg = "DataFrameGroupBy.apply operated on the grouping columns" with tm.assert_produces_warning(DeprecationWarning, match=msg): result = g.apply(lambda x: x.sum()) expected["A"] = [0, 2, 4] expected = expected.loc[:, ["A", "B"]] tm.assert_frame_equal(result, expected) def test_grouper_creation_bug2(self): # GH14334 # Grouper(key=...) may be passed in a list df = DataFrame( {"A": [0, 0, 0, 1, 1, 1], "B": [1, 1, 2, 2, 3, 3], "C": [1, 2, 3, 4, 5, 6]} ) # Group by single column expected = df.groupby("A").sum() g = df.groupby([Grouper(key="A")]) result = g.sum() tm.assert_frame_equal(result, expected) # Group by two columns # using a combination of strings and Grouper objects expected = df.groupby(["A", "B"]).sum() # Group with two Grouper objects g = df.groupby([Grouper(key="A"), Grouper(key="B")]) result = g.sum() tm.assert_frame_equal(result, expected) # Group with a string and a Grouper object g = df.groupby(["A", Grouper(key="B")]) result = g.sum() tm.assert_frame_equal(result, expected) # Group with a Grouper object and a string g = df.groupby([Grouper(key="A"), "B"]) result = g.sum() tm.assert_frame_equal(result, expected) def test_grouper_creation_bug3(self, unit): # GH8866 dti = date_range("20130101", periods=2, unit=unit) mi = MultiIndex.from_product( [list("ab"), range(2), dti], names=["one", "two", "three"], ) ser = Series( np.arange(8, dtype="int64"), index=mi, ) result = ser.groupby(Grouper(level="three", freq="ME")).sum() exp_dti = pd.DatetimeIndex( [Timestamp("2013-01-31")], freq="ME", name="three" ).as_unit(unit) expected = Series( [28], index=exp_dti, ) tm.assert_series_equal(result, expected) # just specifying a level breaks result = ser.groupby(Grouper(level="one")).sum() expected = ser.groupby(level="one").sum() tm.assert_series_equal(result, expected) @pytest.mark.parametrize("func", [False, True]) def test_grouper_returning_tuples(self, func): # GH 22257 , both with dict and with callable df = DataFrame({"X": ["A", "B", "A", "B"], "Y": [1, 4, 3, 2]}) mapping = dict(zip(range(4), [("C", 5), ("D", 6)] * 2)) if func: gb = df.groupby(by=lambda idx: mapping[idx], sort=False) else: gb = df.groupby(by=mapping, sort=False) name, expected = next(iter(gb)) assert name == ("C", 5) result = gb.get_group(name) tm.assert_frame_equal(result, expected) def test_grouper_column_and_index(self): # GH 14327 # Grouping a multi-index frame by a column and an index level should # be equivalent to resetting the index and grouping by two columns idx = MultiIndex.from_tuples( [("a", 1), ("a", 2), ("a", 3), ("b", 1), ("b", 2), ("b", 3)] ) idx.names = ["outer", "inner"] df_multi = DataFrame( {"A": np.arange(6), "B": ["one", "one", "two", "two", "one", "one"]}, index=idx, ) result = df_multi.groupby(["B", Grouper(level="inner")]).mean(numeric_only=True) expected = ( df_multi.reset_index().groupby(["B", "inner"]).mean(numeric_only=True) ) tm.assert_frame_equal(result, expected) # Test the reverse grouping order result = df_multi.groupby([Grouper(level="inner"), "B"]).mean(numeric_only=True) expected = ( df_multi.reset_index().groupby(["inner", "B"]).mean(numeric_only=True) ) tm.assert_frame_equal(result, expected) # Grouping a single-index frame by a column and the index should # be equivalent to resetting the index and grouping by two columns df_single = df_multi.reset_index("outer") result = df_single.groupby(["B", Grouper(level="inner")]).mean( numeric_only=True ) expected = ( df_single.reset_index().groupby(["B", "inner"]).mean(numeric_only=True) ) tm.assert_frame_equal(result, expected) # Test the reverse grouping order result = df_single.groupby([Grouper(level="inner"), "B"]).mean( numeric_only=True ) expected = ( df_single.reset_index().groupby(["inner", "B"]).mean(numeric_only=True) ) tm.assert_frame_equal(result, expected) def test_groupby_levels_and_columns(self): # GH9344, GH9049 idx_names = ["x", "y"] idx = MultiIndex.from_tuples([(1, 1), (1, 2), (3, 4), (5, 6)], names=idx_names) df = DataFrame(np.arange(12).reshape(-1, 3), index=idx) by_levels = df.groupby(level=idx_names).mean() # reset_index changes columns dtype to object by_columns = df.reset_index().groupby(idx_names).mean() # without casting, by_columns.columns is object-dtype by_columns.columns = by_columns.columns.astype(np.int64) tm.assert_frame_equal(by_levels, by_columns) def test_groupby_categorical_index_and_columns(self, observed): # GH18432, adapted for GH25871 columns = ["A", "B", "A", "B"] categories = ["B", "A"] data = np.array( [[1, 2, 1, 2], [1, 2, 1, 2], [1, 2, 1, 2], [1, 2, 1, 2], [1, 2, 1, 2]], int ) cat_columns = CategoricalIndex(columns, categories=categories, ordered=True) df = DataFrame(data=data, columns=cat_columns) depr_msg = "DataFrame.groupby with axis=1 is deprecated" with tm.assert_produces_warning(FutureWarning, match=depr_msg): result = df.groupby(axis=1, level=0, observed=observed).sum() expected_data = np.array([[4, 2], [4, 2], [4, 2], [4, 2], [4, 2]], int) expected_columns = CategoricalIndex( categories, categories=categories, ordered=True ) expected = DataFrame(data=expected_data, columns=expected_columns) tm.assert_frame_equal(result, expected) # test transposed version df = DataFrame(data.T, index=cat_columns) msg = "The 'axis' keyword in DataFrame.groupby is deprecated" with tm.assert_produces_warning(FutureWarning, match=msg): result = df.groupby(axis=0, level=0, observed=observed).sum() expected = DataFrame(data=expected_data.T, index=expected_columns) tm.assert_frame_equal(result, expected) def test_grouper_getting_correct_binner(self): # GH 10063 # using a non-time-based grouper and a time-based grouper # and specifying levels df = DataFrame( {"A": 1}, index=MultiIndex.from_product( [list("ab"), date_range("20130101", periods=80)], names=["one", "two"] ), ) result = df.groupby( [Grouper(level="one"), Grouper(level="two", freq="ME")] ).sum() expected = DataFrame( {"A": [31, 28, 21, 31, 28, 21]}, index=MultiIndex.from_product( [list("ab"), date_range("20130101", freq="ME", periods=3)], names=["one", "two"], ), ) tm.assert_frame_equal(result, expected) def test_grouper_iter(self, df): gb = df.groupby("A") msg = "DataFrameGroupBy.grouper is deprecated" with tm.assert_produces_warning(FutureWarning, match=msg): grouper = gb.grouper result = sorted(grouper) expected = ["bar", "foo"] assert result == expected def test_empty_groups(self, df): # see gh-1048 with pytest.raises(ValueError, match="No group keys passed!"): df.groupby([]) def test_groupby_grouper(self, df): grouped = df.groupby("A") msg = "DataFrameGroupBy.grouper is deprecated" with tm.assert_produces_warning(FutureWarning, match=msg): grouper = grouped.grouper result = df.groupby(grouper).mean(numeric_only=True) expected = grouped.mean(numeric_only=True) tm.assert_frame_equal(result, expected) def test_groupby_dict_mapping(self): # GH #679 s = Series({"T1": 5}) result = s.groupby({"T1": "T2"}).agg("sum") expected = s.groupby(["T2"]).agg("sum") tm.assert_series_equal(result, expected) s = Series([1.0, 2.0, 3.0, 4.0], index=list("abcd")) mapping = {"a": 0, "b": 0, "c": 1, "d": 1} result = s.groupby(mapping).mean() result2 = s.groupby(mapping).agg("mean") exp_key = np.array([0, 0, 1, 1], dtype=np.int64) expected = s.groupby(exp_key).mean() expected2 = s.groupby(exp_key).mean() tm.assert_series_equal(result, expected) tm.assert_series_equal(result, result2) tm.assert_series_equal(result, expected2) @pytest.mark.parametrize( "index", [ [0, 1, 2, 3], ["a", "b", "c", "d"], [Timestamp(2021, 7, 28 + i) for i in range(4)], ], ) def test_groupby_series_named_with_tuple(self, frame_or_series, index): # GH 42731 obj = frame_or_series([1, 2, 3, 4], index=index) groups = Series([1, 0, 1, 0], index=index, name=("a", "a")) result = obj.groupby(groups).last() expected = frame_or_series([4, 3]) expected.index.name = ("a", "a") tm.assert_equal(result, expected) def test_groupby_grouper_f_sanity_checked(self): dates = date_range("01-Jan-2013", periods=12, freq="MS") ts = Series(np.random.default_rng(2).standard_normal(12), index=dates) # GH51979 # simple check that the passed function doesn't operates on the whole index msg = "'Timestamp' object is not subscriptable" with pytest.raises(TypeError, match=msg): ts.groupby(lambda key: key[0:6]) result = ts.groupby(lambda x: x).sum() expected = ts.groupby(ts.index).sum() expected.index.freq = None tm.assert_series_equal(result, expected) def test_groupby_with_datetime_key(self): # GH 51158 df = DataFrame( { "id": ["a", "b"] * 3, "b": date_range("2000-01-01", "2000-01-03", freq="9h"), } ) grouper = Grouper(key="b", freq="D") gb = df.groupby([grouper, "id"]) # test number of groups expected = { (Timestamp("2000-01-01"), "a"): [0, 2], (Timestamp("2000-01-01"), "b"): [1], (Timestamp("2000-01-02"), "a"): [4], (Timestamp("2000-01-02"), "b"): [3, 5], } tm.assert_dict_equal(gb.groups, expected) # test number of group keys assert len(gb.groups.keys()) == 4 def test_grouping_error_on_multidim_input(self, df): msg = "Grouper for '' not 1-dimensional" with pytest.raises(ValueError, match=msg): Grouping(df.index, df[["A", "A"]]) def test_multiindex_passthru(self): # GH 7997 # regression from 0.14.1 df = DataFrame([[1, 2, 3], [4, 5, 6], [7, 8, 9]]) df.columns = MultiIndex.from_tuples([(0, 1), (1, 1), (2, 1)]) depr_msg = "DataFrame.groupby with axis=1 is deprecated" with tm.assert_produces_warning(FutureWarning, match=depr_msg): gb = df.groupby(axis=1, level=[0, 1]) result = gb.first() tm.assert_frame_equal(result, df) def test_multiindex_negative_level(self, multiindex_dataframe_random_data): # GH 13901 result = multiindex_dataframe_random_data.groupby(level=-1).sum() expected = multiindex_dataframe_random_data.groupby(level="second").sum() tm.assert_frame_equal(result, expected) result = multiindex_dataframe_random_data.groupby(level=-2).sum() expected = multiindex_dataframe_random_data.groupby(level="first").sum() tm.assert_frame_equal(result, expected) result = multiindex_dataframe_random_data.groupby(level=[-2, -1]).sum() expected = multiindex_dataframe_random_data.sort_index() tm.assert_frame_equal(result, expected) result = multiindex_dataframe_random_data.groupby(level=[-1, "first"]).sum() expected = multiindex_dataframe_random_data.groupby( level=["second", "first"] ).sum() tm.assert_frame_equal(result, expected) def test_multifunc_select_col_integer_cols(self, df): df.columns = np.arange(len(df.columns)) # it works! msg = "Passing a dictionary to SeriesGroupBy.agg is deprecated" with tm.assert_produces_warning(FutureWarning, match=msg): df.groupby(1, as_index=False)[2].agg({"Q": np.mean}) def test_multiindex_columns_empty_level(self): lst = [["count", "values"], ["to filter", ""]] midx = MultiIndex.from_tuples(lst) df = DataFrame([[1, "A"]], columns=midx) grouped = df.groupby("to filter").groups assert grouped["A"] == [0] grouped = df.groupby([("to filter", "")]).groups assert grouped["A"] == [0] df = DataFrame([[1, "A"], [2, "B"]], columns=midx) expected = df.groupby("to filter").groups result = df.groupby([("to filter", "")]).groups assert result == expected df = DataFrame([[1, "A"], [2, "A"]], columns=midx) expected = df.groupby("to filter").groups result = df.groupby([("to filter", "")]).groups tm.assert_dict_equal(result, expected) def test_groupby_multiindex_tuple(self): # GH 17979 df = DataFrame( [[1, 2, 3, 4], [3, 4, 5, 6], [1, 4, 2, 3]], columns=MultiIndex.from_arrays([["a", "b", "b", "c"], [1, 1, 2, 2]]), ) expected = df.groupby([("b", 1)]).groups result = df.groupby(("b", 1)).groups tm.assert_dict_equal(expected, result) df2 = DataFrame( df.values, columns=MultiIndex.from_arrays( [["a", "b", "b", "c"], ["d", "d", "e", "e"]] ), ) expected = df2.groupby([("b", "d")]).groups result = df.groupby(("b", 1)).groups tm.assert_dict_equal(expected, result) df3 = DataFrame(df.values, columns=[("a", "d"), ("b", "d"), ("b", "e"), "c"]) expected = df3.groupby([("b", "d")]).groups result = df.groupby(("b", 1)).groups tm.assert_dict_equal(expected, result) def test_groupby_multiindex_partial_indexing_equivalence(self): # GH 17977 df = DataFrame( [[1, 2, 3, 4], [3, 4, 5, 6], [1, 4, 2, 3]], columns=MultiIndex.from_arrays([["a", "b", "b", "c"], [1, 1, 2, 2]]), ) expected_mean = df.groupby([("a", 1)])[[("b", 1), ("b", 2)]].mean() result_mean = df.groupby([("a", 1)])["b"].mean() tm.assert_frame_equal(expected_mean, result_mean) expected_sum = df.groupby([("a", 1)])[[("b", 1), ("b", 2)]].sum() result_sum = df.groupby([("a", 1)])["b"].sum() tm.assert_frame_equal(expected_sum, result_sum) expected_count = df.groupby([("a", 1)])[[("b", 1), ("b", 2)]].count() result_count = df.groupby([("a", 1)])["b"].count() tm.assert_frame_equal(expected_count, result_count) expected_min = df.groupby([("a", 1)])[[("b", 1), ("b", 2)]].min() result_min = df.groupby([("a", 1)])["b"].min() tm.assert_frame_equal(expected_min, result_min) expected_max = df.groupby([("a", 1)])[[("b", 1), ("b", 2)]].max() result_max = df.groupby([("a", 1)])["b"].max() tm.assert_frame_equal(expected_max, result_max) expected_groups = df.groupby([("a", 1)])[[("b", 1), ("b", 2)]].groups result_groups = df.groupby([("a", 1)])["b"].groups tm.assert_dict_equal(expected_groups, result_groups) @pytest.mark.parametrize("sort", [True, False]) def test_groupby_level(self, sort, multiindex_dataframe_random_data, df): # GH 17537 frame = multiindex_dataframe_random_data deleveled = frame.reset_index() result0 = frame.groupby(level=0, sort=sort).sum() result1 = frame.groupby(level=1, sort=sort).sum() expected0 = frame.groupby(deleveled["first"].values, sort=sort).sum() expected1 = frame.groupby(deleveled["second"].values, sort=sort).sum() expected0.index.name = "first" expected1.index.name = "second" assert result0.index.name == "first" assert result1.index.name == "second" tm.assert_frame_equal(result0, expected0) tm.assert_frame_equal(result1, expected1) assert result0.index.name == frame.index.names[0] assert result1.index.name == frame.index.names[1] # groupby level name result0 = frame.groupby(level="first", sort=sort).sum() result1 = frame.groupby(level="second", sort=sort).sum() tm.assert_frame_equal(result0, expected0) tm.assert_frame_equal(result1, expected1) # axis=1 msg = "DataFrame.groupby with axis=1 is deprecated" with tm.assert_produces_warning(FutureWarning, match=msg): result0 = frame.T.groupby(level=0, axis=1, sort=sort).sum() result1 = frame.T.groupby(level=1, axis=1, sort=sort).sum() tm.assert_frame_equal(result0, expected0.T) tm.assert_frame_equal(result1, expected1.T) # raise exception for non-MultiIndex msg = "level > 0 or level < -1 only valid with MultiIndex" with pytest.raises(ValueError, match=msg): df.groupby(level=1) def test_groupby_level_index_names(self, axis): # GH4014 this used to raise ValueError since 'exp'>1 (in py2) df = DataFrame({"exp": ["A"] * 3 + ["B"] * 3, "var1": range(6)}).set_index( "exp" ) if axis in (1, "columns"): df = df.T depr_msg = "DataFrame.groupby with axis=1 is deprecated" else: depr_msg = "The 'axis' keyword in DataFrame.groupby is deprecated" with tm.assert_produces_warning(FutureWarning, match=depr_msg): df.groupby(level="exp", axis=axis) msg = f"level name foo is not the name of the {df._get_axis_name(axis)}" with pytest.raises(ValueError, match=msg): with tm.assert_produces_warning(FutureWarning, match=depr_msg): df.groupby(level="foo", axis=axis) @pytest.mark.parametrize("sort", [True, False]) def test_groupby_level_with_nas(self, sort): # GH 17537 index = MultiIndex( levels=[[1, 0], [0, 1, 2, 3]], codes=[[1, 1, 1, 1, 0, 0, 0, 0], [0, 1, 2, 3, 0, 1, 2, 3]], ) # factorizing doesn't confuse things s = Series(np.arange(8.0), index=index) result = s.groupby(level=0, sort=sort).sum() expected = Series([6.0, 22.0], index=[0, 1]) tm.assert_series_equal(result, expected) index = MultiIndex( levels=[[1, 0], [0, 1, 2, 3]], codes=[[1, 1, 1, 1, -1, 0, 0, 0], [0, 1, 2, 3, 0, 1, 2, 3]], ) # factorizing doesn't confuse things s = Series(np.arange(8.0), index=index) result = s.groupby(level=0, sort=sort).sum() expected = Series([6.0, 18.0], index=[0.0, 1.0]) tm.assert_series_equal(result, expected) def test_groupby_args(self, multiindex_dataframe_random_data): # PR8618 and issue 8015 frame = multiindex_dataframe_random_data msg = "You have to supply one of 'by' and 'level'" with pytest.raises(TypeError, match=msg): frame.groupby() msg = "You have to supply one of 'by' and 'level'" with pytest.raises(TypeError, match=msg): frame.groupby(by=None, level=None) @pytest.mark.parametrize( "sort,labels", [ [True, [2, 2, 2, 0, 0, 1, 1, 3, 3, 3]], [False, [0, 0, 0, 1, 1, 2, 2, 3, 3, 3]], ], ) def test_level_preserve_order(self, sort, labels, multiindex_dataframe_random_data): # GH 17537 grouped = multiindex_dataframe_random_data.groupby(level=0, sort=sort) exp_labels = np.array(labels, np.intp) tm.assert_almost_equal(grouped._grouper.codes[0], exp_labels) def test_grouping_labels(self, multiindex_dataframe_random_data): grouped = multiindex_dataframe_random_data.groupby( multiindex_dataframe_random_data.index.get_level_values(0) ) exp_labels = np.array([2, 2, 2, 0, 0, 1, 1, 3, 3, 3], dtype=np.intp) tm.assert_almost_equal(grouped._grouper.codes[0], exp_labels) def test_list_grouper_with_nat(self): # GH 14715 df = DataFrame({"date": date_range("1/1/2011", periods=365, freq="D")}) df.iloc[-1] = pd.NaT grouper = Grouper(key="date", freq="YS") # Grouper in a list grouping result = df.groupby([grouper]) expected = {Timestamp("2011-01-01"): Index(list(range(364)))} tm.assert_dict_equal(result.groups, expected) # Test case without a list result = df.groupby(grouper) expected = {Timestamp("2011-01-01"): 365} tm.assert_dict_equal(result.groups, expected) @pytest.mark.parametrize( "func,expected", [ ( "transform", Series(name=2, dtype=np.float64), ), ( "agg", Series( name=2, dtype=np.float64, index=Index([], dtype=np.float64, name=1) ), ), ( "apply", Series( name=2, dtype=np.float64, index=Index([], dtype=np.float64, name=1) ), ), ], ) def test_evaluate_with_empty_groups(self, func, expected): # 26208 # test transform'ing empty groups # (not testing other agg fns, because they return # different index objects. df = DataFrame({1: [], 2: []}) g = df.groupby(1, group_keys=False) result = getattr(g[2], func)(lambda x: x) tm.assert_series_equal(result, expected) def test_groupby_empty(self): # https://github.com/pandas-dev/pandas/issues/27190 s = Series([], name="name", dtype="float64") gr = s.groupby([]) result = gr.mean() expected = s.set_axis(Index([], dtype=np.intp)) tm.assert_series_equal(result, expected) # check group properties assert len(gr._grouper.groupings) == 1 tm.assert_numpy_array_equal( gr._grouper.group_info[0], np.array([], dtype=np.dtype(np.intp)) ) tm.assert_numpy_array_equal( gr._grouper.group_info[1], np.array([], dtype=np.dtype(np.intp)) ) assert gr._grouper.group_info[2] == 0 # check name gb = s.groupby(s) msg = "SeriesGroupBy.grouper is deprecated" with tm.assert_produces_warning(FutureWarning, match=msg): grouper = gb.grouper result = grouper.names expected = ["name"] assert result == expected def test_groupby_level_index_value_all_na(self): # issue 20519 df = DataFrame( [["x", np.nan, 10], [None, np.nan, 20]], columns=["A", "B", "C"] ).set_index(["A", "B"]) result = df.groupby(level=["A", "B"]).sum() expected = DataFrame( data=[], index=MultiIndex( levels=[Index(["x"], dtype="object"), Index([], dtype="float64")], codes=[[], []], names=["A", "B"], ), columns=["C"], dtype="int64", ) tm.assert_frame_equal(result, expected) def test_groupby_multiindex_level_empty(self): # https://github.com/pandas-dev/pandas/issues/31670 df = DataFrame( [[123, "a", 1.0], [123, "b", 2.0]], columns=["id", "category", "value"] ) df = df.set_index(["id", "category"]) empty = df[df.value < 0] result = empty.groupby("id").sum() expected = DataFrame( dtype="float64", columns=["value"], index=Index([], dtype=np.int64, name="id"), ) tm.assert_frame_equal(result, expected) # get_group # -------------------------------- class TestGetGroup: def test_get_group(self): # GH 5267 # be datelike friendly df = DataFrame( { "DATE": pd.to_datetime( [ "10-Oct-2013", "10-Oct-2013", "10-Oct-2013", "11-Oct-2013", "11-Oct-2013", "11-Oct-2013", ] ), "label": ["foo", "foo", "bar", "foo", "foo", "bar"], "VAL": [1, 2, 3, 4, 5, 6], } ) g = df.groupby("DATE") key = next(iter(g.groups)) result1 = g.get_group(key) result2 = g.get_group(Timestamp(key).to_pydatetime()) result3 = g.get_group(str(Timestamp(key))) tm.assert_frame_equal(result1, result2) tm.assert_frame_equal(result1, result3) g = df.groupby(["DATE", "label"]) key = next(iter(g.groups)) result1 = g.get_group(key) result2 = g.get_group((Timestamp(key[0]).to_pydatetime(), key[1])) result3 = g.get_group((str(Timestamp(key[0])), key[1])) tm.assert_frame_equal(result1, result2) tm.assert_frame_equal(result1, result3) # must pass a same-length tuple with multiple keys msg = "must supply a tuple to get_group with multiple grouping keys" with pytest.raises(ValueError, match=msg): g.get_group("foo") with pytest.raises(ValueError, match=msg): g.get_group("foo") msg = "must supply a same-length tuple to get_group with multiple grouping keys" with pytest.raises(ValueError, match=msg): g.get_group(("foo", "bar", "baz")) def test_get_group_empty_bins(self, observed): d = DataFrame([3, 1, 7, 6]) bins = [0, 5, 10, 15] g = d.groupby(pd.cut(d[0], bins), observed=observed) # TODO: should prob allow a str of Interval work as well # IOW '(0, 5]' result = g.get_group(pd.Interval(0, 5)) expected = DataFrame([3, 1], index=[0, 1]) tm.assert_frame_equal(result, expected) msg = r"Interval\(10, 15, closed='right'\)" with pytest.raises(KeyError, match=msg): g.get_group(pd.Interval(10, 15)) def test_get_group_grouped_by_tuple(self): # GH 8121 df = DataFrame([[(1,), (1, 2), (1,), (1, 2)]], index=["ids"]).T gr = df.groupby("ids") expected = DataFrame({"ids": [(1,), (1,)]}, index=[0, 2]) result = gr.get_group((1,)) tm.assert_frame_equal(result, expected) dt = pd.to_datetime(["2010-01-01", "2010-01-02", "2010-01-01", "2010-01-02"]) df = DataFrame({"ids": [(x,) for x in dt]}) gr = df.groupby("ids") result = gr.get_group(("2010-01-01",)) expected = DataFrame({"ids": [(dt[0],), (dt[0],)]}, index=[0, 2]) tm.assert_frame_equal(result, expected) def test_get_group_grouped_by_tuple_with_lambda(self): # GH 36158 df = DataFrame( { "Tuples": ( (x, y) for x in [0, 1] for y in np.random.default_rng(2).integers(3, 5, 5) ) } ) gb = df.groupby("Tuples") gb_lambda = df.groupby(lambda x: df.iloc[x, 0]) expected = gb.get_group(next(iter(gb.groups.keys()))) result = gb_lambda.get_group(next(iter(gb_lambda.groups.keys()))) tm.assert_frame_equal(result, expected) def test_groupby_with_empty(self): index = pd.DatetimeIndex(()) data = () series = Series(data, index, dtype=object) grouper = Grouper(freq="D") grouped = series.groupby(grouper) assert next(iter(grouped), None) is None def test_groupby_with_single_column(self): df = DataFrame({"a": list("abssbab")}) tm.assert_frame_equal(df.groupby("a").get_group("a"), df.iloc[[0, 5]]) # GH 13530 exp = DataFrame(index=Index(["a", "b", "s"], name="a"), columns=[]) tm.assert_frame_equal(df.groupby("a").count(), exp) tm.assert_frame_equal(df.groupby("a").sum(), exp) exp = df.iloc[[3, 4, 5]] tm.assert_frame_equal(df.groupby("a").nth(1), exp) def test_gb_key_len_equal_axis_len(self): # GH16843 # test ensures that index and column keys are recognized correctly # when number of keys equals axis length of groupby df = DataFrame( [["foo", "bar", "B", 1], ["foo", "bar", "B", 2], ["foo", "baz", "C", 3]], columns=["first", "second", "third", "one"], ) df = df.set_index(["first", "second"]) df = df.groupby(["first", "second", "third"]).size() assert df.loc[("foo", "bar", "B")] == 2 assert df.loc[("foo", "baz", "C")] == 1 # groups & iteration # -------------------------------- class TestIteration: def test_groups(self, df): grouped = df.groupby(["A"]) groups = grouped.groups assert groups is grouped.groups # caching works for k, v in grouped.groups.items(): assert (df.loc[v]["A"] == k).all() grouped = df.groupby(["A", "B"]) groups = grouped.groups assert groups is grouped.groups # caching works for k, v in grouped.groups.items(): assert (df.loc[v]["A"] == k[0]).all() assert (df.loc[v]["B"] == k[1]).all() def test_grouping_is_iterable(self, tsframe): # this code path isn't used anywhere else # not sure it's useful grouped = tsframe.groupby([lambda x: x.weekday(), lambda x: x.year]) # test it works for g in grouped._grouper.groupings[0]: pass def test_multi_iter(self): s = Series(np.arange(6)) k1 = np.array(["a", "a", "a", "b", "b", "b"]) k2 = np.array(["1", "2", "1", "2", "1", "2"]) grouped = s.groupby([k1, k2]) iterated = list(grouped) expected = [ ("a", "1", s[[0, 2]]), ("a", "2", s[[1]]), ("b", "1", s[[4]]), ("b", "2", s[[3, 5]]), ] for i, ((one, two), three) in enumerate(iterated): e1, e2, e3 = expected[i] assert e1 == one assert e2 == two tm.assert_series_equal(three, e3) def test_multi_iter_frame(self, three_group): k1 = np.array(["b", "b", "b", "a", "a", "a"]) k2 = np.array(["1", "2", "1", "2", "1", "2"]) df = DataFrame( { "v1": np.random.default_rng(2).standard_normal(6), "v2": np.random.default_rng(2).standard_normal(6), "k1": k1, "k2": k2, }, index=["one", "two", "three", "four", "five", "six"], ) grouped = df.groupby(["k1", "k2"]) # things get sorted! iterated = list(grouped) idx = df.index expected = [ ("a", "1", df.loc[idx[[4]]]), ("a", "2", df.loc[idx[[3, 5]]]), ("b", "1", df.loc[idx[[0, 2]]]), ("b", "2", df.loc[idx[[1]]]), ] for i, ((one, two), three) in enumerate(iterated): e1, e2, e3 = expected[i] assert e1 == one assert e2 == two tm.assert_frame_equal(three, e3) # don't iterate through groups with no data df["k1"] = np.array(["b", "b", "b", "a", "a", "a"]) df["k2"] = np.array(["1", "1", "1", "2", "2", "2"]) grouped = df.groupby(["k1", "k2"]) # calling `dict` on a DataFrameGroupBy leads to a TypeError, # we need to use a dictionary comprehension here # pylint: disable-next=unnecessary-comprehension groups = {key: gp for key, gp in grouped} # noqa: C416 assert len(groups) == 2 # axis = 1 three_levels = three_group.groupby(["A", "B", "C"]).mean() depr_msg = "DataFrame.groupby with axis=1 is deprecated" with tm.assert_produces_warning(FutureWarning, match=depr_msg): grouped = three_levels.T.groupby(axis=1, level=(1, 2)) for key, group in grouped: pass def test_dictify(self, df): dict(iter(df.groupby("A"))) dict(iter(df.groupby(["A", "B"]))) dict(iter(df["C"].groupby(df["A"]))) dict(iter(df["C"].groupby([df["A"], df["B"]]))) dict(iter(df.groupby("A")["C"])) dict(iter(df.groupby(["A", "B"])["C"])) def test_groupby_with_small_elem(self): # GH 8542 # length=2 df = DataFrame( {"event": ["start", "start"], "change": [1234, 5678]}, index=pd.DatetimeIndex(["2014-09-10", "2013-10-10"]), ) grouped = df.groupby([Grouper(freq="ME"), "event"]) assert len(grouped.groups) == 2 assert grouped.ngroups == 2 assert (Timestamp("2014-09-30"), "start") in grouped.groups assert (Timestamp("2013-10-31"), "start") in grouped.groups res = grouped.get_group((Timestamp("2014-09-30"), "start")) tm.assert_frame_equal(res, df.iloc[[0], :]) res = grouped.get_group((Timestamp("2013-10-31"), "start")) tm.assert_frame_equal(res, df.iloc[[1], :]) df = DataFrame( {"event": ["start", "start", "start"], "change": [1234, 5678, 9123]}, index=pd.DatetimeIndex(["2014-09-10", "2013-10-10", "2014-09-15"]), ) grouped = df.groupby([Grouper(freq="ME"), "event"]) assert len(grouped.groups) == 2 assert grouped.ngroups == 2 assert (Timestamp("2014-09-30"), "start") in grouped.groups assert (Timestamp("2013-10-31"), "start") in grouped.groups res = grouped.get_group((Timestamp("2014-09-30"), "start")) tm.assert_frame_equal(res, df.iloc[[0, 2], :]) res = grouped.get_group((Timestamp("2013-10-31"), "start")) tm.assert_frame_equal(res, df.iloc[[1], :]) # length=3 df = DataFrame( {"event": ["start", "start", "start"], "change": [1234, 5678, 9123]}, index=pd.DatetimeIndex(["2014-09-10", "2013-10-10", "2014-08-05"]), ) grouped = df.groupby([Grouper(freq="ME"), "event"]) assert len(grouped.groups) == 3 assert grouped.ngroups == 3 assert (Timestamp("2014-09-30"), "start") in grouped.groups assert (Timestamp("2013-10-31"), "start") in grouped.groups assert (Timestamp("2014-08-31"), "start") in grouped.groups res = grouped.get_group((Timestamp("2014-09-30"), "start")) tm.assert_frame_equal(res, df.iloc[[0], :]) res = grouped.get_group((Timestamp("2013-10-31"), "start")) tm.assert_frame_equal(res, df.iloc[[1], :]) res = grouped.get_group((Timestamp("2014-08-31"), "start")) tm.assert_frame_equal(res, df.iloc[[2], :]) def test_grouping_string_repr(self): # GH 13394 mi = MultiIndex.from_arrays([list("AAB"), list("aba")]) df = DataFrame([[1, 2, 3]], columns=mi) gr = df.groupby(df[("A", "a")]) result = gr._grouper.groupings[0].__repr__() expected = "Grouping(('A', 'a'))" assert result == expected def test_grouping_by_key_is_in_axis(): # GH#50413 - Groupers specified by key are in-axis df = DataFrame({"a": [1, 1, 2], "b": [1, 1, 2], "c": [3, 4, 5]}).set_index("a") gb = df.groupby([Grouper(level="a"), Grouper(key="b")], as_index=False) assert not gb._grouper.groupings[0].in_axis assert gb._grouper.groupings[1].in_axis # Currently only in-axis groupings are including in the result when as_index=False; # This is likely to change in the future. msg = "A grouping .* was excluded from the result" with tm.assert_produces_warning(FutureWarning, match=msg): result = gb.sum() expected = DataFrame({"b": [1, 2], "c": [7, 5]}) tm.assert_frame_equal(result, expected) def test_grouper_groups(): # GH#51182 check Grouper.groups does not raise AttributeError df = DataFrame({"a": [1, 2, 3], "b": 1}) grper = Grouper(key="a") gb = df.groupby(grper) msg = "Use GroupBy.groups instead" with tm.assert_produces_warning(FutureWarning, match=msg): res = grper.groups assert res is gb.groups msg = "Use GroupBy.grouper instead" with tm.assert_produces_warning(FutureWarning, match=msg): res = grper.grouper assert res is gb._grouper msg = "Grouper.obj is deprecated and will be removed" with tm.assert_produces_warning(FutureWarning, match=msg): res = grper.obj assert res is gb.obj msg = "Use Resampler.ax instead" with tm.assert_produces_warning(FutureWarning, match=msg): grper.ax msg = "Grouper.indexer is deprecated" with tm.assert_produces_warning(FutureWarning, match=msg): grper.indexer @pytest.mark.parametrize("attr", ["group_index", "result_index", "group_arraylike"]) def test_depr_grouping_attrs(attr): # GH#56148 df = DataFrame({"a": [1, 1, 2], "b": [3, 4, 5]}) gb = df.groupby("a") msg = f"{attr} is deprecated" with tm.assert_produces_warning(FutureWarning, match=msg): getattr(gb._grouper.groupings[0], attr)